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Radiology

Ontologies representing knowledge from the public health and surveillance domains currently exist. However, they focus on infectious diseases (infectious disease ontology), reportable diseases (PHSkbFretired) and internet surveillance from news text (BioCaster ontology), or are commercial products (OntoReason public health ontology). From the perspective of biosurveillance text mining, these ontologies do not adequately represent the kind of knowledge found in clinical reports. Our project aims to fill this gap by developing a stand-alone ontology for the public health/biosurveillance domain, which (1) provides a starting point for standard development, (2) is straightforward for public health professionals to use for text analysis, and (3) can be easily plugged into existing syndromic surveillance systems.

 

Objective

To develop an application ontology - the extended syndromic surveillance ontology - to support text mining of ER and radiology reports for public health surveillance. The ontology encodes syndromes, diagnoses, symptoms, signs and radiology results relevant to syndromic surveillance (with a special focus on bioterrorism).

Referenced File
Submitted by hparton on

A number of syndromic surveillance systems include tools that quickly identify potentially large disease outbreak events. However, the high falsepositive rate continues to be a problem in all of these systems. Our earlier work has showed that multi-source information fusion can improve specificity of the syndromic surveillance systems. However, an anomalous health event that presents as only a few cases may remain undetected because the chief complaint data does not contain enough details. New linked data sources need to be used to enhance detection capabilities. The focus of this project examining the incorporation of laboratory, prescription medications and radiology data linked to the patient encounter within syndromic surveillance systems. These data source linkings may enhance the sensitivity of syndromic surveillance.

Referenced File
Submitted by elamb on

BioSense currently receives demographic and chief complaint data from more than 360 hospitals and text radiology reports from 36 hospitals. Detection of pneumonia is an important as several Category A bioterrorism diseases as well as avian influenza can manifest as pneumonia. Radiology text reports are often received within 1-2 days and may provide a faster way to identify pneumonia than coded diagnoses. Objective To study the performance of a simple keyword search of radiology reports for identifying pneumonia.

Referenced File
Submitted by elamb on
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