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Infectious Disease

Description

An estimated one in six Americans experience illness from the consumption of contaminated food (foodborne illness) annually; most are neither diagnosed nor reported to health departments1. Eating food prepared outside of the home is an established risk factor for foodborne illness2. New York City (NYC) has approximately 24,000 restaurants and >8.5 million residents, of whom 78% report eating food prepared outside of the home at least once per week3. Residents and visitors can report incidents of restaurant-associated foodborne illness to a citywide non-emergency information service, 311. In 2012, the NYC Department of Health and Mental Hygiene (DOHMH) began collaborating with Columbia University to improve the detection of restaurant-associated foodborne illness complaints using a machine learning algorithm and a daily feed of Yelp reviews to identify reports of foodborne illness4. Annually, DOHMH manages over 4,000 restaurant-associated foodborne illness reports received via 311 and identified on Yelp which lead to the detection of about 30 outbreaks associated with a restaurant in NYC. Given the small number of foodborne illness outbreaks identified, it is probable that many restaurant-associated foodborne illness incidents remain unreported. DOHMH sought to incorporate and evaluate an additional data source, Twitter, to enhance foodborne illness complaint and outbreak detection efforts in NYC.

Objective:

To incorporate data from Twitter into the New York City Department of Health and Mental Hygiene foodborne illness surveillance system and evaluate its utility and impact on foodborne illness complaint and outbreak detection.

Submitted by elamb on
Description

Timely identification of arboviral disease is key to prevent transmission in the community, but traditional surveillance may take up to 14 days between specimen collection and health department notification. Arizona state and county health agencies began monitoring National Syndromic Surveillance Program BioSense 2.0 data for patients infected with West Nile virus (WNV), St. Louis encephalitis virus (SLEV), chikungunya, or dengue virus in August 2015. Zika virus was added in April 2016. Our novel methods were presented at the International Society for Disease Surveillance 2015 Annual Conference. Twice per week, we queried patient records from 15 Maricopa County BioSense-enrolled emergency department and inpatient hospitals for chief complaint keywords and discharge diagnosis codes. Our Case Investigation Decision Tree helped us determine whether records had a high or low degree of evidence for arboviral disease and necessitated further investigation. This study evaluated how Arizona’s protocol for conducting syndromic surveillance compared to traditional arboviral surveillance in terms of accuracy and timeliness in Maricopa County from August 2015 through December 2016.

Objective:

To evaluate Arizona’s arboviral syndromic surveillance protocol in Maricopa County.

Submitted by elamb on
Description

Measles is a vaccine preventable, highly transmissible viral infection that affects mostly under-five year children. The disease is caused by a Morbillivirus; member of the Paramyxovirus family.

Objective:

We reviewed measles specific Integretaged Disease Surveillance and Response (IDSR) data from Nigeria over a five-year period to highlights its burden and trends, and make recommendations for improvements.

Submitted by elamb on
Description

GAS pharyngitis affects hundreds of millions of individuals globally each year, and over 12 million seek care in the United States annually for sore throat. Clinicians cannot differentiate GAS from other causes of acute pharyngitis based on the oropharynx exam, so consensus guidelines recommend use of clinical scores to classify GAS risk and guide management of adults with acute pharyngitis. When the clinical score is low, consensus guidelines agree patients should neither be tested nor treated for GAS. A prediction model that could identify very-low risk patients prior to an ambulatory visit could reduce low-yield, unnecessary visits for a most common outpatient condition. We recently showed that real-time biosurveillance can further identify patients at low-risk of GAS. With increasing emphasis on patient-centric health care and the well-documented barriers impeding clinicians’ incorporation of prediction models into medical practice, this presents an opportunity to create a patient-centric model for GAS pharyngitis based on history and recent local epidemiology. We refer to this model as the “home score,” because it is designed for use prior to a physical exam.

Objective

1. To derive and validate an accurate clinical prediction model (“home score”) to estimate a patient’s risk of group A streptococcal (GAS) pharyngitis before a health care visit based only on history and real-time local biosurveillance, and to compare its accuracy to traditional clinical prediction models composed of history and physical exam features. 2. To examine the impact of a home score on patient and public health outcomes.

Submitted by rmathes on
Description

Zanzibar is comprised primarily of two large islands with a population of 1.3 million. Indoor Residual Spraying (IRS) campaigns, distribution of long-lasting insecticide treated bed nets (LLINs), ensuring treatment medication is available, and use of Rapid Diagnostic Tests (RDTs) have reduced Malaria prevalence from 39% in 2005[1] to less than 1% in 2011-2012. This is the third time Zanzibar has been close to eliminating malaria, but there are serious challenges. These include vector resistance to pyrethroids, the shortlived efficacy of LLINs, and resistance to behavior change. Constant traffic with mainland Tanzania and foreign countries also poses the risk of outbreaks. An effective and sustained surveillance and rapid response system is essential to control outbreaks and optimize interventions.

Objective

This presentation aims to share the results of a six-year effort to use mobile health (mHealth) technology to help eliminate malaria from a well-defined geographic area. This presentation will review the history, technology, results, lessons-learned, and applicability to other contexts.

Submitted by uysz on
Description

The Electronic Surveillance System for the Early Notification of Community-Based Epidemics (ESSENCE-FL) receives daily (or bi-hourly) data from 184 emergency departments (ED) from around Florida. Additionally, 30 urgent care centers submit daily data to the system. These 214 facilities are grouped together in an acute care data source category. Five to six days after the start of each school year in Florida, ESSENCE-FL shows increased respiratory illness visits in the school aged population. Previous analyses of these data have shown that this increase is a result of increased transmission of the common cold among school children. In early September 2014, during this sustained yearly increase in respiratory visits, reports of more severe infection caused by Enterovirus D68 (EV-D68) in children in other parts of the country began circulating. Public health officials in Florida, as well as the media, questioned whether children in the state were being infected by this virus capable of causing more severe illness, especially among asthmatics. As is the case with many incipient outbreaks, syndromic surveillance played an integral role in early efforts to detect the presence of this illness. The task of providing situational awareness during this period was complicated by this outbreak coinciding with the start of the school year.

Objective

To provide situational awareness using Florida’s syndromic surveillance system during a 2014 outbreak of EV-D68 in other regions of the country.

Submitted by uysz on
Description

Chikungunya virus disease (CHIK) is a mosquito-borne viral infection currently widespread in the Caribbean with the potential for emergence and endemicity in the U.S. via infected travelers and local mosquito vectors. CHIK disease can be severe and disabling with symptoms similar to dengue. CHIK is not a U.S. nationally notifiable disease and tracking travel-associated and locally acquired cases is currently dependent on voluntary reporting via ArboNET. While ArboNET cases are laboratory confirmed and highly specific, ArboNET is a passive surveillance system where representativeness and timeliness may be lacking. In contrast, submitting an electronic bill following HC services is the most mature and widely used form of eHealth. Providers are highly motivated to submit claims for reimbursement and the eHRC process is ubiquitous in the U.S. HC system. HIPAA-compliant eHRCs from provider offices can be captured in e-commerce and consolidated into electronic data warehouses and used for many purposes including public health surveillance. eHRCs are standardized and each claim contains pertinent person, place, and time information as well as ICD-9 diagnostic codes. IMS Health (IMS) is a global HC information company and maintains one of world’s largest eHealth data warehouses that processes ~1 billion provider office eHRCs annually. IMS consolidates eHRCs from >60% of all U.S. office-based providers from all parts of the U.S. The size and predictability of the eHRC flow into the IMS data warehouse supports projections of national estimates and time trends of conditions of interest.

Objective

This paper describes how high-volume electronic healthcare (HC) reimbursement claims (eHRCs) from providers’ offices can be used to supplement Chikungunya surveillance in the U.S.

 

 

Submitted by uysz on
Description

Decreasing contact between infectious and susceptible people in community settings may reduce influenza transmission. Examining the temporal relationship between the winter holiday break and seasonal influenza activity can provide insight of alternative contact patterns on influenza spread.

Objective

To explore the relationship between influenza-like illness observed by influenza out-patient network and winter holiday breaks in US.

Submitted by teresa.hamby@d… on
Description

Regional disease surveillance as well as data transparency and sharing are the global trend for mitigating the threat of infectious diseases. The WHO has already played a leading role in FluNet (http:// www.who.int/influenza/gisrs_laboratory/flunet/en/ ) and DenguNet (http://www.who.int/csr/disease/dengue/denguenet/en/). However, the enterovirus-related infections which caused a high disease burden for pre-school children in South-East Asian regions over the last two decades still lack a comprehensive surveillance system in the region [1]. If the spreading pattern and a possible alert mechanism can be identified and set up, it will be beneficial for controlling hand, foot and mouth disease (HFMD) epidemics in East Asia. In some research findings, the transmission of HFMD was correlated with temperature, relative humidity, wind speed, precipitation, population density and the periods in which schools were open [2]. A delayed temporal trend was also found with the increase in latitude [3,4] . In this study, we tried to apply publicly available weekly surveillance data in Japan, Taiwan and Singapore to evaluate the spatio-temporal evolution of HFMD epidemics and how the weather conditions affect the HFMD epidemics.

Objective

Enterovirus epidemics, especially affecting young children, have occurred in South-East Asia every year. If the epidemic periods are inter-correlated among different areas, early warning signals could be issued to prevent or reduce the severity of the later epidemics in other areas. In this study, we integrated the available surveillance and weather data in East Asia to elucidate possible spatio-temporal correlations and weather conditions among different areas from low to high latitude.

Submitted by Magou on
Description

The purpose of this work was to develop a novel method of estimating the amount of influenza-like illness (ILI) in a population, in near-real time, by using a source of information that is completely open to the public and free to access. We investigated the usefulness of data gathered from Wikipedia to estimate the prevalence of ILI in the United States, using data from the Centers for Disease Control and Prevention (CDC) as well as Google Flu Trends.

Introduction

Each year, there are an estimated 250,000–500,000 deaths worldwide that are attributed to seasonal influenza, with anywhere between 3,000–50,000 deaths occurring in the United States of America (US). In the US, the Centers for Disease Control and Prevention (CDC) continuously monitors the level of influenza-like illness (ILI) circulating in the population. While the CDC ILI data is considered to be a useful indicator of influenza activity, its availability has a known lag-time of between 7–14 days. To appropriately distribute vaccines, staff, and other healthcare commodities, it is critical to have up-to-date information about the prevalence of ILI in a population. To this end, we have created a method of estimating current ILI activity in the US by gathering information on the number of times particular Wikipedia articles have been viewed. Not only is the information held within Wikipedia articles very useful on its own, but statistics and trends surrounding the amount of usage of particular articles, frequency of article edits, region specific statistics, and countless other factors make the Wikipedia environment an area of interest for researchers. Furthermore, Wikipedia makes all of this information public and freely available, greatly increasing and expediting any potential research studies that aim to make use of their data.

 

Submitted by aising on