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Data Analytics

For its June 2010 Literature Review, the ISDS Research Committee invited Anne Presanis, Medical Research Council Biostatistics Unit, Cambridge, UK, to present her paper "The Severity of Pandemic H1N1 Influenza in the United States, from April to July 2009: A Bayesian Analysis" published in the December 2009 issue of PLoS Medicine.

Presenter

Anne Presanis, Medical Research Council Biostatistics Unit

Date

Thursday, June 24, 2010

Host

ISDS Research Committee

Michael A. Horst, PhD, MPHS, MS, joined the April 2010 ISDS Literature Review to present his recent publication, "Observing the Spread of Common Illnesses Through a Community: Using Geographic Information Systems (GIS) for Surveillance," from the Journal of the American Board of Family Medicine.The Literature Review Subgroup found this article particularly important becase it represents an initiative to link health risk mapping with cluster detection methods that many health monitors employ.

For its January 2011 Literature Review, the ISDS Research Committee invited Daniel B. Neill, PhD, Assistant Professor of Information Systems at Carnegie Mellon University, to present his paper, "An Empirical Comparison of Spatial Scan Statistics for Outbreak Detection," published in the International Journal of Health Geographics.

Presenter

Daniel B. Neill, PhD, Assistant Professor of Information Systems, Carnegie Mellon University

Date and Time

Thursday, January 27, 2011

Host

This presentation will focus on health managment information systems (HMIS) and surveillance activities in resource limited settings. The presenters will discuss how systems could be enhanced using smart phones or other innovative technologies and provide examples of ongoing applications in the field.

Panelists

Marion McNabb, MPH, DrPh Candidate, Program Manager, DGAP, Center for Global Health and Development, Boston University School of Public Health

Participants will be provided with an overview of a study to determine the requirements of a national operational modeling process, including the study, methodology, and key findings. These include an overview of the current operational epidemiological modeling landscape, a summary of recommendations for the establishment of a national operational epidemiological modeling process, and recommendations for its implementation.

One Certified in Public Health (CPH) recertification credit will be available for attending this webinar and completing a short post-presentation evaluation.

Description

The catchment area of a health-care facility is used to assess health service utilization and calculate population-based rates of disease. Current approaches for catchment definition have significant limitations such as being based solely on distance from the facility or using an arbitrary threshold for inclusion.

Objective

We propose a simple statistical method, the cumulative case ratio, for defining a catchment area using surveillance data.

Submitted by rmathes on

The panelists will present their current technical research using Twitter data for disease surveillance. Presentation topics may include filtering and processing of tweets, as well as the analysis and presentation of findings for surveillance purposes.

Panelists

Courtney Corley, Pacific Northwest National Laboratory

Marcel Salathe, Pennsylvania State University

Mark Cameron, Commonwealth Scientific and Industrial Research Organisation (CSIRO)

Description

Major depressive disorder has a lifetime prevalence of 16.6% in the United States. Social media platforms – e.g. Twitter, Facebook, Reddit – are potential resources for better understanding and monitoring population-level mental health status over time. Based on DSM-5 diagnostic criteria, our research aims to develop a natural language processing-based system for monitoring major depressive disorder at the population-level using public social media data.

Objective

We aim to develop an annotation scheme and corpus of depression-related tweets to serve as a test-bed for the development of natural language processing algorithms capable of automatically identifying depression-related symptoms from Twitter feeds.

Submitted by teresa.hamby@d… on
Description

A variety of big data analytics, techniques and tools including social media analytics, open source visualizations, statistical anomaly detection, use of Application Programming Interfaces (APIs), and geospatial mapping, are used for infectious disease biosurveillance. Using these methodologies, policy makers and practitioners detect and monitor outbreaks across the world near real time, in multiple languages, 24/7. The non-infectious disease community, namely critical care, injury, and trauma stakeholders, currently lack this level of sophistication. To respond to most MCIs like a terrorist bombing, validated, real-time information is typically available via closed radio channels and limited to a specific set of emergency responders. Health care workers, policy makers, and citizens reach for news, radio, and Internet sources to characterize casualties and hazards, and increasingly social media. During the Boston Marathon bombing, witnesses began posting tweets seconds after the bombing and 15 seconds before CNN reported the incident. Current trauma data sets are unhelpful for real time response, including trauma registries that are used for hospital performance after an incident, and disaster databases consist of secondary reporting used for academic research purposes.

Objective

Discuss how different big-data analytics, techniques, and tools including open source platforms, cloud analytics, social media, crowdsourcing, and geospatial visualization can be used to quickly achieve situational awareness within seconds of a MCI, for use by pre-hospital responders, healthcare workers, and policy makers.

 

Submitted by Magou on
Description

Public health departments need enhanced surveillance tools for population monitoring, and external researchers have expertise and methods to provide these tools. However, collaboration with potential solution developers and students in academia, industry, and government has not been sufficiently close or well informed for rapid progress. Many peer-reviewed papers on biosurveillance methods have been published by researchers, but few methods have been adopted in systems used by health departments. In a 2013 BioSense User Group survey with responses from users in more than 40 U.S. states, access to improved analytic methods was a top priority. Among the tools most desired by respondents were the ESSENCE biosurveillance system with multiple analytic tools and statistical software packages such as SAS. Multiple obstacles have slowed the progress of practitioners and developers who seek the development and implementation of useful analytic tools. First, the epidemiological challenges and associated operational constraints are not sufficiently understood among academic developers. Many health departments do not have the resources to hire such developers beyond maintenance of information technology, and the health monitors are typically too busy to publish in peer-reviewed journals. Second, data cannot be shared because of privacy and proprietary limitations with varying local rules. Data-sharing has posed difficult administrative problems, both within and external to health departments, in the course of ISDS Technical Conventions committee efforts to promote interactions through use case problems. Third, aspects of situational awareness vary widely among health monitors at different jurisdictional levels, so analytical challenges and constraints vary widely among potential users. Practitioners have pointed out that “surveillance is local”, but local operational and data environments vary widely. A fourth main issue is cross-cultural: Understaffed health departments must respond to successive crises and often lack the time for requirements analysis and technical publication. Such client work situations complicate interaction with academic environments of semester schedules and limited grants and transient student support. This panel brings together academic statisticians who have had successful direct relationships with public health departments to discuss how they have dealt with these challenges.

Objective

The session will explore past collaborations between the scientist panelists and public health departments to highlight approaches that have and have not been effective and to recommend effective, sustainable relationship strategies for the mutual advancement of practical disease surveillance and relevant academic research.

Submitted by teresa.hamby@d… on