Siddiqui Tariq

A comprehensive electronic medical record (EMR) represents a rich source of information that can be harnessed for epidemic surveillance. At this time, however, we do not know how EMR-based data elements should be combined to improve the performance of surveillance systems. In a manual EMR review of over 15 000 outpatient encounters, we observed that two-thirds of the cases with an acute respiratory infection (ARI) were seen in the emergency room or other urgent care areas, but that these areas received only 15% of total outpatient visits. Because of this seemingly favorable signal-to-noise ratio, we hypothesized that an ARI surveillance system that focused on urgent visits would outperform one that monitored all outpatient visits.

Information about disease severity could help with both detection and situational awareness during outbreaks of acute respiratory infections (ARI). In this work, we use data from the EMR to identify patients with pneumonia, a key landmark of ARI severity. We asked if computerized analysis of the free-text of clinical notes or imaging reports could complement structured EMR data to uncover pneumonia cases.

Objective

To improve the surveillance for pneumonia using the free-text of electronic medical records (EMR).

Effective responses to epidemics of infectious diseases hinge not only on early outbreak detection, but also on an assessment of disease severity. In recent work, we combined previously developed ARI case-detection algorithms (CDA) [1] with text analyses of chest imaging reports to identify ARI patients whose providers thought had pneumonia. In this work, we asked if a surveillance system aimed at patients with pneumonia would outperform one that monitors the full severity spectrum of ARI.

Objective

To determine if influenza surveillance should target all patients with acute respiratory infections (ARI) or only track pneumonia cases.